Package: rbioapi 0.8.0

rbioapi: User-Friendly R Interface to Biologic Web Services' API

Currently fully supports Enrichr, JASPAR, miEAA, PANTHER, Reactome, STRING, and UniProt! The goal of rbioapi is to provide a user-friendly and consistent interface to biological databases and services. In a way that insulates the user from the technicalities of using web services API and creates a unified and easy-to-use interface to biological and medical web services. This is an ongoing project; New databases and services will be added periodically. Feel free to suggest any databases or services you often use.

Authors:Moosa Rezwani [aut, cre]

rbioapi_0.8.0.tar.gz
rbioapi_0.8.0.zip(r-4.5)rbioapi_0.8.0.zip(r-4.4)rbioapi_0.8.0.zip(r-4.3)
rbioapi_0.8.0.tgz(r-4.4-any)rbioapi_0.8.0.tgz(r-4.3-any)
rbioapi_0.8.0.tar.gz(r-4.5-noble)rbioapi_0.8.0.tar.gz(r-4.4-noble)
rbioapi_0.8.0.tgz(r-4.4-emscripten)rbioapi_0.8.0.tgz(r-4.3-emscripten)
rbioapi.pdf |rbioapi.html✨
rbioapi/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/moosa-r/rbioapi/issues

On CRAN:

api-clientbioinformaticsbiologyenrichmentenrichment-analysisenrichrjasparmieaaover-representation-analysispantherreactomestringuniprot

111 exports 17 stars 2.07 score 8 dependencies 46 scripts 377 downloads

Last updated 6 months agofrom:8f6c955204. Checks:OK: 7. Indexed: yes.

Exports:rba_connection_testrba_enrichrrba_enrichr_add_listrba_enrichr_enrichrba_enrichr_gene_maprba_enrichr_libsrba_enrichr_view_listrba_jaspar_collectionsrba_jaspar_collections_matricesrba_jaspar_matrixrba_jaspar_matrix_searchrba_jaspar_matrix_versionsrba_jaspar_releasesrba_jaspar_sitesrba_jaspar_speciesrba_jaspar_species_matricesrba_jaspar_taxonsrba_jaspar_taxons_matricesrba_jaspar_tffmrba_jaspar_tffm_searchrba_mieaa_catsrba_mieaa_convert_typerba_mieaa_convert_versionrba_mieaa_enrichrba_mieaa_enrich_resultsrba_mieaa_enrich_statusrba_mieaa_enrich_submitrba_optionsrba_pagesrba_panther_enrichrba_panther_familyrba_panther_homologrba_panther_inforba_panther_mappingrba_panther_orthologrba_panther_tree_grafterrba_reactome_analysisrba_reactome_analysis_downloadrba_reactome_analysis_importrba_reactome_analysis_mappingrba_reactome_analysis_pdfrba_reactome_analysis_speciesrba_reactome_analysis_tokenrba_reactome_complex_listrba_reactome_complex_subunitsrba_reactome_diseasesrba_reactome_entity_other_formsrba_reactome_event_ancestorsrba_reactome_event_hierarchyrba_reactome_exporter_diagramrba_reactome_exporter_eventrba_reactome_exporter_overviewrba_reactome_exporter_reactionrba_reactome_interactors_psicquicrba_reactome_interactors_staticrba_reactome_mappingrba_reactome_orthologyrba_reactome_participant_ofrba_reactome_participantsrba_reactome_pathways_eventsrba_reactome_pathways_lowrba_reactome_pathways_toprba_reactome_people_idrba_reactome_people_namerba_reactome_queryrba_reactome_speciesrba_reactome_versionrba_reactome_xrefrba_string_annotationsrba_string_enrichmentrba_string_enrichment_ppirba_string_homology_interrba_string_homology_intrarba_string_interaction_partnersrba_string_interactions_networkrba_string_map_idsrba_string_network_imagerba_string_versionrba_uniprot_antigensrba_uniprot_antigens_searchrba_uniprot_coordinatesrba_uniprot_coordinates_locationrba_uniprot_coordinates_searchrba_uniprot_coordinates_sequencerba_uniprot_featuresrba_uniprot_features_searchrba_uniprot_genecentricrba_uniprot_genecentric_searchrba_uniprot_mutagenesisrba_uniprot_mutagenesis_searchrba_uniprot_proteinsrba_uniprot_proteins_crossrefrba_uniprot_proteins_searchrba_uniprot_proteomesrba_uniprot_proteomes_searchrba_uniprot_proteomicsrba_uniprot_proteomics_searchrba_uniprot_ptmrba_uniprot_ptm_searchrba_uniprot_taxonomyrba_uniprot_taxonomy_lcarba_uniprot_taxonomy_lineagerba_uniprot_taxonomy_namerba_uniprot_taxonomy_pathrba_uniprot_taxonomy_relationshiprba_uniprot_uniparcrba_uniprot_uniparc_bestguessrba_uniprot_uniparc_searchrba_uniprot_uniparc_sequencerba_uniprot_variationrba_uniprot_variation_search

Dependencies:askpasscurlhttrjsonlitemimeopensslR6sys